Papers 2012 | Yuri Pirola, Paola Bonizzoni, Tao Jiang An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations and Mutations (Article) IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9, 1, Page(s): 12-25, 2012. (Links | BibTeX) @article{TCBB12,
name = {An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations and Mutations},
author = {Yuri Pirola and Paola Bonizzoni and Tao Jiang},
url = {http://dx.doi.org/10.1109/TCBB.2011.51},
year = {2012},
date = {2012-01-01},
journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics},
volume = {9},
number = {1},
pages = {12-25},
}
|
2011 | Leonardo Vanneschi, Yuri Pirola, Giancarlo Mauri, Marco Tomassini, Philippe Collard, Sebastien Verel A Study of Neutrality of Boolean Function Landscapes in Genetic Programming (Article) Theoretical Computer Science, 2011. (Links | BibTeX) @article{TCS11,
name = {A Study of Neutrality of Boolean Function Landscapes in Genetic Programming},
author = {Leonardo Vanneschi and Yuri Pirola and Giancarlo Mauri and Marco Tomassini and Philippe Collard and Sebastien Verel},
note = {In press},
url = {http://dx.doi.org/10.1016/j.tcs.2011.03.011},
year = {2011},
date = {2011-01-01},
journal = {Theoretical Computer Science},
note = {In press},
}
|
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Raffaella Rizzi PIntron: a fast method for gene structure prediction via maximal pairings of a pattern and a text (Inproceeding) Proc. of the 1st IEEE Int. Conf. on Computational Advances in Bio and medical Sciences, ICCABS 2011, Orlando, FL, USA, Feb. 3-5, 2011, Page(s): 33-39, IEEE Computer Society, 2011. (Links | BibTeX) @inproceedings{iccabs11,
name = {PIntron: a fast method for gene structure prediction via maximal pairings of a pattern and a text},
author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Raffaella Rizzi},
url = {http://dx.doi.org/10.1109/ICCABS.2011.5729935},
year = {2011},
date = {2011-01-01},
booktitle = {Proc. of the 1st IEEE Int. Conf. on Computational Advances in Bio and medical Sciences, ICCABS 2011, Orlando, FL, USA, Feb. 3-5, 2011},
pages = {33-39},
publisher = {IEEE Computer Society},
}
|
Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola Parameterized Complexity of k-Anonymity: Hardness and Tractability (Inproceeding) Iliopoulos, Costas; Smyth, William (Ed.): Revised selected papers of the 21st Int. Workshop on Combinatorial Algorithms, IWOCA 2010, London, UK, Jul. 26-28, 2010, Page(s): 242-255, Springer, 2011. (Links | BibTeX) @inproceedings{iwoca10,
name = {Parameterized Complexity of k-Anonymity: Hardness and Tractability},
author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola},
editor = {Costas S. Iliopoulos and William F. Smyth},
url = {http://dx.doi.org/10.1007/978-3-642-19222-7_25},
year = {2011},
date = {2011-01-01},
booktitle = {Revised selected papers of the 21st Int. Workshop on Combinatorial Algorithms, IWOCA 2010, London, UK, Jul. 26-28, 2010},
volume = {6460},
pages = {242-255},
publisher = {Springer},
series = {Lecture Notes in Computer Science},
}
|
2010 | Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola Variants of constrained longest common subsequence (Article) Information Processing Letters, 110, 20, Page(s): 877-881, 2010. (Links | BibTeX) @article{IPL10,
name = {Variants of constrained longest common subsequence},
author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola},
url = {http://dx.doi.org/10.1016/j.ipl.2010.07.015},
year = {2010},
date = {2010-07-01},
journal = {Information Processing Letters},
volume = {110},
number = {20},
pages = {877-881},
}
|
Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Romeo Rizzi Pure Parsimony Xor Haplotyping (Article) IEEE/ACM Transactions on Computational Biology and Bioinformatics, 7, 4, Page(s): 598-610, 2010. (Links | BibTeX) @article{TCBB10,
name = {Pure Parsimony Xor Haplotyping},
author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola and Romeo Rizzi},
url = {http://dx.doi.org/10.1109/TCBB.2010.52},
year = {2010},
date = {2010-11-01},
journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics},
volume = {7},
number = {4},
pages = {598-610},
}
|
Gianluca Della Vedova, Riccardo Dondi, Tao Jiang, Giulio Pavesi, Yuri Pirola, Lusheng Wang Beyond Evolutionary Trees (Article) Natural Computing, 9, 2, Page(s): 421-435, 2010. (Links | BibTeX) @article{NatComp09,
name = {Beyond Evolutionary Trees},
author = {Gianluca Della Vedova and Riccardo Dondi and Tao Jiang and Giulio Pavesi and Yuri Pirola and Lusheng Wang},
url = {http://dx.doi.org/10.1007/s11047-009-9156-6},
year = {2010},
date = {2010-06-01},
journal = {Natural Computing},
volume = {9},
number = {2},
pages = {421-435},
}
|
Yuri Pirola, Paola Bonizzoni, Tao Jiang Haplotype Inference on Pedigrees with Recombinations and Mutations (Inproceeding) Moulton, Vincent; Singh, Mona (Ed.): Proc. of the 10th Int. Workshop on Algorithms in Bioinformatics, WABI 2010, Liverpool, UK, Sept. 6-8, 2010, Page(s): 148-161, Springer, 2010. (Links | BibTeX) @inproceedings{wabi10,
name = {Haplotype Inference on Pedigrees with Recombinations and Mutations},
author = {Yuri Pirola and Paola Bonizzoni and Tao Jiang},
editor = {Vincent Moulton and Mona Singh},
url = {http://dx.doi.org/10.1007/978-3-642-15294-8_13},
year = {2010},
date = {2010-01-01},
booktitle = {Proc. of the 10th Int. Workshop on Algorithms in Bioinformatics, WABI 2010, Liverpool, UK, Sept. 6-8, 2010},
volume = {6293},
pages = {148-161},
publisher = {Springer},
series = {Lecture Notes in Computer Science},
}
|
Yuri Pirola Combinatorial Problems in Studies of Genetic Variations: Haplotyping and Transcript Analysis (PhD Thesis) Univ. degli Studi di Milano-Bicocca, 2010. (Links | BibTeX) @phdthesis{phdthesisPirola10,
name = {Combinatorial Problems in Studies of Genetic Variations: Haplotyping and Transcript Analysis},
author = {Yuri Pirola},
url = {http://hdl.handle.net/10281/7891},
year = {2010},
date = {2010-02-01},
school = {Univ. degli Studi di Milano-Bicocca},
}
|
2009 | Paola Bonizzoni, Giancarlo Mauri, Graziano Pesole, Ernesto Picardi, Yuri Pirola, Raffaella Rizzi Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach (Article) Journal of Computational Biology, 16, 1, Page(s): 43-66, 2009. (Links | BibTeX) @article{jcb09,
name = {Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach},
author = {Paola Bonizzoni and Giancarlo Mauri and Graziano Pesole and Ernesto Picardi and Yuri Pirola and Raffaella Rizzi},
url = {http://dx.doi.org/10.1089/cmb.2008.0028},
year = {2009},
date = {2009-01-01},
journal = {Journal of Computational Biology},
volume = {16},
number = {1},
pages = {43-66},
}
|
Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Romeo Rizzi Pure Parsimony Xor Haplotyping (Inproceeding) Mandoiu,; Narasimhan,; Zhang, (Ed.): Proc. of the 5th Int. Symp. on Bioinformatics Research and Applications, ISBRA 2009, Fort Lauderdale FL, USA, May~13-16, 2009, Page(s): 186-197, Springer, 2009. (Links | BibTeX) @inproceedings{isbra09,
name = {Pure Parsimony Xor Haplotyping},
author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola and Romeo Rizzi},
editor = {I. Mandoiu and G. Narasimhan and Y. Zhang},
url = {http://dx.doi.org/10.1007/978-3-642-01551-9_19},
year = {2009},
date = {2009-01-01},
booktitle = {Proc. of the 5th Int. Symp. on Bioinformatics Research and Applications, ISBRA 2009, Fort Lauderdale FL, USA, May~13-16, 2009},
volume = {5542},
pages = {186-197},
publisher = {Springer},
series = {Lecture Notes in Computer Science},
}
|
Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Raffaella Rizzi Minimum Factorization Agreement of Spliced ESTs (Inproceeding) Salzberg,; Warnow, (Ed.): Proc. of the 9th Int. Workshop on Algorithms in Bioinformatics, WABI 2009, Philadelphia PA, USA, Sept. 12-13, 2009, Page(s): 1-12, Springer, 2009. (Links | BibTeX) @inproceedings{wabi09,
name = {Minimum Factorization Agreement of Spliced ESTs},
author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola and Raffaella Rizzi},
editor = {S. Salzberg and T. Warnow},
url = {http://dx.doi.org/10.1007/978-3-642-04241-6_1},
year = {2009},
date = {2009-01-01},
booktitle = {Proc. of the 9th Int. Workshop on Algorithms in Bioinformatics, WABI 2009, Philadelphia PA, USA, Sept. 12-13, 2009},
volume = {5724},
pages = {1-12},
publisher = {Springer},
series = {Lecture Notes in Computer Science},
}
|
2007 | Leonardo Vanneschi, Marco Tomassini, Philippe Collard, Sebastien Verel, Yuri Pirola, Giancarlo Mauri A Comprehensive View of Fitness Landscapes with Neutrality and Fitness Clouds (Inproceeding) Ebner,; O'Neill,; Ekart,; Vanneschi,; Esparcia-Alcazar, (Ed.): Proc. of the 10th European Conf. on Genetic Programming, EuroGP 2007, Valencia, Spain, Apr. 11-13, 2007, Page(s): 241-250, Springer, 2007. (Links | BibTeX) @inproceedings{eurogp07,
name = {A Comprehensive View of Fitness Landscapes with Neutrality and Fitness Clouds},
author = {Leonardo Vanneschi and Marco Tomassini and Philippe Collard and Sebastien Verel and Yuri Pirola and Giancarlo Mauri},
editor = {M. Ebner and M. O'Neill and A. Ekart and L. Vanneschi and A. I. Esparcia-Alcazar},
url = {http://dx.doi.org/10.1007/978-3-540-71605-1_22},
year = {2007},
date = {2007-01-01},
booktitle = {Proc. of the 10th European Conf. on Genetic Programming, EuroGP 2007, Valencia, Spain, Apr. 11-13, 2007},
volume = {4445},
pages = {241-250},
publisher = {Springer},
series = {Lecture Notes in Computer Science},
}
|
2006 | Leonardo Vanneschi, Yuri Pirola, Philippe Collard A quantitative study of neutrality in GP boolean landscapes (Inproceeding) Proc. of the 8th Annual Conf. on Genetic and evolutionary computation, GECCO 2006, Seattle, WA, USA, Jul. 8-12, 2006, Page(s): 895-902, ACM, 2006. (Links | BibTeX) @inproceedings{gecco06,
name = {A quantitative study of neutrality in GP boolean landscapes},
author = {Leonardo Vanneschi and Yuri Pirola and Philippe Collard},
url = {http://dx.doi.org/10.1145/1143997.1144152},
year = {2006},
date = {2006-01-01},
booktitle = {Proc. of the 8th Annual Conf. on Genetic and evolutionary computation, GECCO 2006, Seattle, WA, USA, Jul. 8-12, 2006},
pages = {895-902},
publisher = {ACM},
}
|
|
|
