Papers

Yuri Pirola, Paola Bonizzoni, Tao Jiang

An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations and Mutations (Article)

IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9, 1, Page(s): 12-25, 2012.

Leonardo Vanneschi, Yuri Pirola, Giancarlo Mauri, Marco Tomassini, Philippe Collard, Sebastien Verel

A Study of Neutrality of Boolean Function Landscapes in Genetic Programming (Article)

Theoretical Computer Science, 2011.

Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Raffaella Rizzi

PIntron: a fast method for gene structure prediction via maximal pairings of a pattern and a text (Inproceeding)

Proc. of the 1st IEEE Int. Conf. on Computational Advances in Bio and medical Sciences, ICCABS 2011, Orlando, FL, USA, Feb. 3-5, 2011, Page(s): 33-39, IEEE Computer Society, 2011.

Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola

Parameterized Complexity of k-Anonymity: Hardness and Tractability (Inproceeding)

Iliopoulos, Costas; Smyth, William (Ed.): Revised selected papers of the 21st Int. Workshop on Combinatorial Algorithms, IWOCA 2010, London, UK, Jul. 26-28, 2010, Page(s): 242-255, Springer, 2011.

Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola

Variants of constrained longest common subsequence (Article)

Information Processing Letters, 110, 20, Page(s): 877-881, 2010.

Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Romeo Rizzi

Pure Parsimony Xor Haplotyping (Article)

IEEE/ACM Transactions on Computational Biology and Bioinformatics, 7, 4, Page(s): 598-610, 2010.

Gianluca Della Vedova, Riccardo Dondi, Tao Jiang, Giulio Pavesi, Yuri Pirola, Lusheng Wang

Beyond Evolutionary Trees (Article)

Natural Computing, 9, 2, Page(s): 421-435, 2010.

Yuri Pirola, Paola Bonizzoni, Tao Jiang

Haplotype Inference on Pedigrees with Recombinations and Mutations (Inproceeding)

Moulton, Vincent; Singh, Mona (Ed.): Proc. of the 10th Int. Workshop on Algorithms in Bioinformatics, WABI 2010, Liverpool, UK, Sept. 6-8, 2010, Page(s): 148-161, Springer, 2010.

Yuri Pirola

Combinatorial Problems in Studies of Genetic Variations: Haplotyping and Transcript Analysis (PhD Thesis)

Univ. degli Studi di Milano-Bicocca, 2010.

Paola Bonizzoni, Giancarlo Mauri, Graziano Pesole, Ernesto Picardi, Yuri Pirola, Raffaella Rizzi

Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach (Article)

Journal of Computational Biology, 16, 1, Page(s): 43-66, 2009.

Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Romeo Rizzi

Pure Parsimony Xor Haplotyping (Inproceeding)

Mandoiu,; Narasimhan,; Zhang, (Ed.): Proc. of the 5th Int. Symp. on Bioinformatics Research and Applications, ISBRA 2009, Fort Lauderdale FL, USA, May~13-16, 2009, Page(s): 186-197, Springer, 2009.

Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Raffaella Rizzi

Minimum Factorization Agreement of Spliced ESTs (Inproceeding)

Salzberg,; Warnow, (Ed.): Proc. of the 9th Int. Workshop on Algorithms in Bioinformatics, WABI 2009, Philadelphia PA, USA, Sept. 12-13, 2009, Page(s): 1-12, Springer, 2009.

Leonardo Vanneschi, Marco Tomassini, Philippe Collard, Sebastien Verel, Yuri Pirola, Giancarlo Mauri

A Comprehensive View of Fitness Landscapes with Neutrality and Fitness Clouds (Inproceeding)

Ebner,; O'Neill,; Ekart,; Vanneschi,; Esparcia-Alcazar, (Ed.): Proc. of the 10th European Conf. on Genetic Programming, EuroGP 2007, Valencia, Spain, Apr. 11-13, 2007, Page(s): 241-250, Springer, 2007.

Leonardo Vanneschi, Yuri Pirola, Philippe Collard

A quantitative study of neutrality in GP boolean landscapes (Inproceeding)

Proc. of the 8th Annual Conf. on Genetic and evolutionary computation, GECCO 2006, Seattle, WA, USA, Jul. 8-12, 2006, Page(s): 895-902, ACM, 2006.